After installing version 6.10.0 some files are being ignored for compilation in a specific folder.
I couldn't see no log messages in .log file or console view. Not sure if this is a bug or a problem with my reports, but I can say that: I wrote some java code to compile my reports outside jasperstudio (due to several problems with japerstudio compiler), and it works, so I don't think this is a problem with my report or folder.
By the way, the reports in my jasperstudio project aren't inside the project folder. Instead they are links do external folders. Don't know if this has something to do but I tought it would be interesting to mention.